Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKAD-DGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
3A8J Chain:E ((2-126))
-NVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESV-AASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLE
General information:
TITO was launched using:
RESULT:
Template:
3A8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46433 for 976 contacts (-47.6/contact) +
2D Compatibility (PS) -13119 + (NN) -4486 + (LL) 272
1D Compatibility (HY) -12800 + (ID) 3150
Total energy: -79716.0 ( -81.68 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_3A8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A8J-query.scw
PDB file :
Tito_Scwrl_3A8J.pdb
: