Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
1R1D Chain:A ((6-247))
----PPKPFFFEAGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVMNGYQFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMERFKQTPMKTLKALQELIADVRAHLDLVYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLESLDW--
General information:
TITO was launched using:
RESULT:
Template:
1R1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140766 for 2092 contacts (-67.3/contact) +
2D Compatibility (PS) -25649 + (NN) -6985 + (LL) 752
1D Compatibility (HY) -28400 + (ID) 6500
Total energy: -207548.0 ( -99.21 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1R1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R1D-query.scw
PDB file :
Tito_Scwrl_1R1D.pdb
: