Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIFIEVMKERFGEFE-GETVWKWTM-INDHDMRMSVLNYGAIVTSLETKDKFGDFANISLGFTNLDDYLAHS-PYFGATLGPVAGRITNGQFSLDGKQFQLIQNEGSNHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGKIDAKMTYTLNNKNEWLVDYEARSNQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPI-GEKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHTFILK---HENGRPDAVLFDPKSGRRLEMETKADSVLIYTANSLDGSFEIDERAVP--KYAGITMETQGLVDAINHEGFGDIVLRPEKPFTSRTAFRFTVES |
| 4RNL Chain:A ((7-343)) | ----QVSREPFGTLDDGTRVDRWTLESGPAGLRVRVLTYGGIVQTVEAPDRDGMRGQLALGFADLASYAAHGGSYFGALVGRYANRIAGASFVLDGRTDALTPNNGRHSLHGGPGGFSRVVWDA---REVDGGVQ-LHRVSPDGEEGFPGALDVRVTYTLSAGALRIVSC-ATTDAPTVVNLTNHTYLNLGGDGSGSAAGHELRLAASRYTPVDGTGIPVPGAPAEVTGTRFDFRAARAVA--------------GAYDHNFALDGGVREAPRTVAELYDPRSGRALALATTEPGLQLYTADHLDGTL-TGTSGVPYGPAAGLALETQHFPDSPNRPDFPSTVLRPGESYRSETVYAFSVR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96850 for 2918 contacts (-33.2/contact) +
2D Compatibility (PS) -34888 + (NN) -6356 + (LL) 2420
1D Compatibility (HY) -19200 + (ID) 6200
Total energy: -161074.0 ( -55.20 by residue)
QMean score : 0.439
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