Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFDNVDTVVMGRTTY----QQIFSLTDT-----FPYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNID---GEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQEHALELEEVTRFGQFAQLTYKNLEEN
2GD9 Chain:A ((6-159))
LKQRRIILDLAVTLDGFIEGKNGEVDWCIM---DPDMGFTDFLNQIDTILYGRKSFDLWGQY-------KELWKLVHSKKK-YVFSRTQNEI-DNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIHPVVLGEGKPLF------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68213 for 885 contacts (-77.1/contact) +
2D Compatibility (PS) -13588 + (NN) -887 + (LL) 3504
1D Compatibility (HY) -15600 + (ID) 2500
Total energy: -97284.0 ( -109.93 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2GD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GD9-query.scw
PDB file :
Tito_Scwrl_2GD9.pdb
: