Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII
1RIP Chain:A ((5-84))
-----QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV--
General information:
TITO was launched using:
RESULT:
Template:
1RIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6473 for 519 contacts (-12.5/contact) +
2D Compatibility (PS) -8345 + (NN) 696 + (LL) 704
1D Compatibility (HY) -9600 + (ID) 3300
Total energy: -26318.0 ( -50.71 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1RIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RIP-query.scw
PDB file :
Tito_Scwrl_1RIP.pdb
: