Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKAVVKTNPGYDQMELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFK-GEYKNP--TTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSD-RLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEESII---QREIAYIGSRSQKPSSWILALDLLANGKIDTDKMITKVY-GLDDWREAFEAVMAGNEIKVLVKS |
| 3GFB Chain:A ((5-344)) | MQAIMKTKPAYGA-ELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIA--GRSTLITGAGPLGLLGIAVAKASGAYPVI--VSEPSEFRRKLAKKVGADYVVNPFEEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFP-REVTIDFNNLIIFKALEVHGITGRHLW-ETWYTVSSLIQSGKLNLDPIITHKYKGFDKFEEAFELMRAGKTGKVV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161381 for 2881 contacts (-56.0/contact) +
2D Compatibility (PS) -35188 + (NN) -12040 + (LL) 436
1D Compatibility (HY) -21600 + (ID) 6000
Total energy: -235773.0 ( -81.84 by residue)
QMean score : 0.417
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