Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VRHVVIFCASILNRFFASVECVKRRLNPL--EAYLVVMSNAERAGGLVLAATP--KMKQEHHIKTGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFRRYVPAEFIHVYSIDECFLDVTGSHLLFGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLALDNVAKNRDDGIAEWRYEHVPETIWKIRHLDDVCGIGRRTAVRLQKMGIFNMYQLSQTPPQVLKNVMGVVGEQLYYHAHGIDYSLLNEKYVPVSKSYGKSQILEKDYHVPAEVEIVIREMVEEVAMRLRQNHVDTAVIHLSVGYSKYSIKKGFSHQAKIPPTSSSHALIPYFLQLFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDFTQTLNHEQLEITVDKIRSRYGFKSLMHASSLLNGATGLKRSEMVGGHKG |
4IR9 Chain:F ((10-289)) | -----------MDCFFAAVEM---RDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCP----HLTLLPGRFDAYKEASNHIREIFSRYT--SRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASD---MNKPNGQFVITPAEVPAFLQTL-PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER--LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IR9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170916 for 1930 contacts (-88.6/contact) +
2D Compatibility (PS) -29119 + (NN) -6178 + (LL) 9372
1D Compatibility (HY) -10400 + (ID) 4000
Total energy: -211241.0 ( -109.45 by residue)
QMean score : 0.403
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