Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKPYGVVIISHSKDVAKGVHDIIKEI-APDVSITHAGGTEDGRIGTS----FDAVNEAIENNEANKVYTFYDLGSA----KMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK |
3B48 Chain:A ((5-108)) | ------ILLVSHSKMITDGIKEMIEQMN-EEITIHSLGGTSDGSLGSDPMKIIDTINEADSDRE---FLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFASA---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6685 for 570 contacts (11.7/contact) +
2D Compatibility (PS) -8992 + (NN) 2793 + (LL) 2636
1D Compatibility (HY) 3200 + (ID) 500
Total energy: 5822.0 ( 10.21 by residue)
QMean score : 0.126
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