Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQPEENAIYPNDDMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN
2BSW Chain:A ((2-143))
IEVKPINAEDTYELRHRILRPNQPIEACMFESDLLRGAFHLGGYYGGKLISIASFHQAEHSELQGQKQYQLRGMATLEGYREQKAGSSLIKHAEEILRKRGADLLWCNARTSASGYYKKLGFSEQGEVFDTPPVGPHILMYK-----------
General information:
TITO was launched using:
RESULT:
Template:
2BSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39788 for 1080 contacts (-36.8/contact) +
2D Compatibility (PS) -15026 + (NN) -3836 + (LL) 100
1D Compatibility (HY) -9200 + (ID) 2850
Total energy: -70600.0 ( -65.37 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2BSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BSW-query.scw
PDB file :
Tito_Scwrl_2BSW.pdb
: