Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP----EYMLSHTCLVREPEKFYQFVTENMY-YPNAVPNVIHKKMAEIETEKDV-TIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMTVTAKDYLK----SDIHT--DCGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKERISLPYPFEMMESDAVKVFEEI
2H4J Chain:A ((3-199))
MKEFLDLLNESRLTVTLTGAGISTPSGIPDF----------SQNVFDIDFFYSH------PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAEL--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2H4J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96378 for 1276 contacts (-75.5/contact) +
2D Compatibility (PS) -19675 + (NN) -10757 + (LL) 4284
1D Compatibility (HY) -17600 + (ID) 3450
Total energy: -143576.0 ( -112.52 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2H4J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4J-query.scw
PDB file :
Tito_Scwrl_2H4J.pdb
: