Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKFLSIIILVTLIIGNVMFFNFISNTLSRDFLFKEQTVVQFKYKEDYQVSDFNNSIKTFSETKNINIAQYTFLGERDLNIYGSNCQFAPNINLKKGDYPNKNQFLANEESVDKKQSGVIYHPSKYWSLKVYDFGQIKNVGLSDTFYVSGLDNQNTYQAFLKEFEQYGEVTTKSVDVSWWKYINIPLLMTLLLCFAILFVFTYYYLRYSKQRLLVNRIWGNSELVTLMSLFNKTIIFTLFSVLAILITFVSIVLANGLATYLVEIVWKLLLFNVLLFIFILFPMYFFGLLRIKKIDQAKSDQRMQSSRQHLAINLVIKFVLLCLFIGTFIASYQSLQTLNTRLANIDVWEATKDIFKVKVGVLPEGIQDDLKADKELNDNLSAFYEEGTSKKEMFLMYSNNFQRSETNTFFYETYLKKGSEINSPEGNSVEIDFNYLKLNPIKSIKGQNVGKEAIISDKVLNIIVPNSKKGLEKDIKNTFLDYFYFQKVEVANIYNEALDLPAVALSKEDLRVNIIYAENNQDYFSYDSNTGDFRTGNITDPIAIVYTGNIDSSSIGAHVTSSVYFVDKSNGDAFNAILPLISNSNAREITHVRSVYQEVSSEITTLKWQIYQQLIGTIILALCLCSFMVLLVLSYYRENLYKQLIYHVFGYSFWKSSKWFIISNLFVSVFSGILIFILSKEPVALYFSVVILIIELCAIYFIKEKAIYKDFKAILKGEKYD |
1OYP Chain:A ((175-230)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 539 for 291 contacts (1.9/contact) +
2D Compatibility (PS) -5482 + (NN) 1603 + (LL) 54280
1D Compatibility (HY) -2000 + (ID) 800
Total energy: 48140.0 ( 165.43 by residue)
QMean score : 0.211
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