Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLDRVTLEDIEVNLKAEDWREAIQMSARLLLERGAIKESYIDGMIQSVENNGPYIVIAKHIALAHTRPEFGVIHGGLTFATLADGVAF--GSDMFDPVKLIITLAATDSESHLEV-LSELAEVLMDEEKVTRLIEANSSQAFYDELTKEG
3BJV Chain:A ((12-139))
---------SIRLGLTAKDWKEAVKLSVTPLIESGAVKPEYYNAIIESTESYGPYYILMPGMAMPHARPEAGVQRDAFSLVTLTEPVTFTDGKE----VQVLLALAATSSKIHTSVAIPQIIALFELDHSIERLVNCKTPE----------
General information:
TITO was launched using:
RESULT:
Template:
3BJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97651 for 926 contacts (-105.5/contact) +
2D Compatibility (PS) -13184 + (NN) -4573 + (LL) 1852
1D Compatibility (HY) -12800 + (ID) 2100
Total energy: -128456.0 ( -138.72 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3BJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJV-query.scw
PDB file :
Tito_Scwrl_3BJV.pdb
: