Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRTNVRGTFVVSKQA---ALRVRNGGAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKAT----PLERLGQPEDIAETVAFLAG-PARWVNGQVIFTNGGLA
3OSU Chain:A ((5-243))
----KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRS-GAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPG-----FIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG--
General information:
TITO was launched using:
RESULT:
Template:
3OSU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117978 for 1987 contacts (-59.4/contact) +
2D Compatibility (PS) -25411 + (NN) -12583 + (LL) 360
1D Compatibility (HY) -14400 + (ID) 4900
Total energy: -174912.0 ( -88.03 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_3OSU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OSU-query.scw
PDB file :
Tito_Scwrl_3OSU.pdb
: