Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK
1D6T Chain:A ((3-115))
LEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAK-DIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKK-----
General information:
TITO was launched using:
RESULT:
Template:
1D6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53418 for 896 contacts (-59.6/contact) +
2D Compatibility (PS) -11749 + (NN) -2874 + (LL) -344
1D Compatibility (HY) -12400 + (ID) 2950
Total energy: -83735.0 ( -93.45 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_1D6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D6T-query.scw
PDB file :
Tito_Scwrl_1D6T.pdb
: