Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQVGSLVEMKKPHACVIKETGKKANQWKVLRVGADIKIQCTNCQH-VIMMSRYDFERKLKKVLQP
2GMG Chain:A ((75-104))
-------------------------FVFKA---EINIPSRCPKCKSEWIEEPRFKLERK-------
General information:
TITO was launched using:
RESULT:
Template:
2GMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5066 for 95 contacts (-53.3/contact) +
2D Compatibility (PS) -2992 + (NN) -62 + (LL) 3364
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -6756.0 ( -71.12 by residue)
QMean score : -0.043
(partial model without unconserved sides chains):
PDB file :
Tito_2GMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMG-query.scw
PDB file :
Tito_Scwrl_2GMG.pdb
: