Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
3FB4 Chain:A ((1-212))
MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD-CQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL-
General information:
TITO was launched using:
RESULT:
Template:
3FB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62533 for 1604 contacts (-39.0/contact) +
2D Compatibility (PS) -22482 + (NN) -9849 + (LL) 380
1D Compatibility (HY) -22800 + (ID) 6000
Total energy: -123284.0 ( -76.86 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3FB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FB4-query.scw
PDB file :
Tito_Scwrl_3FB4.pdb
: