Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRLYIARHGKTMFNTIGRAQGWSDTPLTTFGELGIKELGLGLKASNISFKEAFSSDSGRTLQTMEIILREVQQENIPYTRDKRIREWCFGSLDGGYDGDLFNGVLPRVSNGDMSHLTHEEIANLICQVDTAGWAEP----------WAILSNRILSGFTAIAKKIEDIGGGNAIVVSHGMTIATFLWL-----IDH--STPRSLGIDNGSVSVVDFEDGTFSIQSIGDMSYREKGREILEKTLQ
1H2F Chain:A ((4-207))
-----LYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEA--VELAAIYTSTSGRALETAEIVR---GGRLIPIYQDERLREIHLGDWEGK---------------------THDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHE---GETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGT---SVTIIEVDGGTFHVAVEGDVSHIEEVKEV------
General information:
TITO was launched using:
RESULT:
Template:
1H2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70655 for 1470 contacts (-48.1/contact) +
2D Compatibility (PS) -19619 + (NN) -6857 + (LL) 1532
1D Compatibility (HY) -10000 + (ID) 3300
Total energy: -108899.0 ( -74.08 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1H2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H2F-query.scw
PDB file :
Tito_Scwrl_1H2F.pdb
: