Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVFNKLFKRRHSVSEEIKKDDLQEEVEATETEETVEEV--IEEIPEKSELELANERADEFENKYLRAHAEMQNIQRRSSEERQQLQRYRSQDLAKAILPSLDNLERALAV--EGLTDDVKKGLEMTRDSLIQALKEEGVE---EVEVDSFDHNFHMAVQTLPADDEHPADSIAEVFQKGYKLHERLLRPAMVVVYN
1DKG Chain:A ((34-192))
-----------------------------------AEQVDPRDEKVANLEAQLAEAQTRE-RDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVAMSAMVEDI----ELTLKSMLDVVRKFGVEVIAETNV-PLDPNVHQAIAMVESDDVAPGNVLG-IMQKGYTLNGRTIRAAMVTVAK
General information:
TITO was launched using:
RESULT:
Template:
1DKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5726 for 810 contacts (-7.1/contact) +
2D Compatibility (PS) -15587 + (NN) -3059 + (LL) 3504
1D Compatibility (HY) -10400 + (ID) 2500
Total energy: -33768.0 ( -41.69 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1DKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DKG-query.scw
PDB file :
Tito_Scwrl_1DKG.pdb
: