Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMHGHDFLP--FNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
4YF4 Chain:A ((11-170))
--TVTDDYLANNVDYASGF-KGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIR---PTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVT
General information:
TITO was launched using:
RESULT:
Template:
4YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79489 for 1056 contacts (-75.3/contact) +
2D Compatibility (PS) -17174 + (NN) -10877 + (LL) 168
1D Compatibility (HY) -14000 + (ID) 3500
Total energy: -124872.0 ( -118.25 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_4YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YF4-query.scw
PDB file :
Tito_Scwrl_4YF4.pdb
: