Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLIILTVILVLVIVLLITSLYVVKQQTVAIIERFGKYQKTATSGIHIRVPLGIDKIAARVQLRLLQSEIIVETKTKDNVFVTLNIATQYRVNENNVTDAYYKLIKPEA-QIKSYIEDALRSSVPKLTLDEL-------FEKKDEIALEVQHQVAEEMSTYGYI-----IVKTLITKVEPDAEVKQSMNEINAAQRKR----VAAQELANADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLADSIQELKDANVTLTEEQIMSIL---LTNQYLDTLNTFAINGNQTIFLPNNPEGVEDIRTQVLSALKTR |
| 4GIM Chain:A ((29-217)) | --------------------------------------------------------------------------------------------------------ISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLI-GYQTKALPAFFCRTSPFDVSIRLDSASE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 14421 for 1246 contacts (11.6/contact) +
2D Compatibility (PS) -17062 + (NN) 4679 + (LL) 10800
1D Compatibility (HY) -2400 + (ID) 2350
Total energy: 8088.0 ( 6.49 by residue)
QMean score : 0.176
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