Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLDMLSYDFMQRALLAVVAISIFAPILGIFLILRRQSLMSDTLSHVSLAGVALGVVLGI----------SPTWSTIFVVTLAAVVLEY--LRTVYKHYMEISTAILMSMGLAISLI---VMSKA-HNVGNVSLEQ---YLFGSIITIGKEQVIALFVIALITFILTILFI-RPMYILTFDEDTAFVDGLPVRTMSILFNVVTGIAIALTIPAAGALLVSTIMVLPASIAMRLGRNFKTVIFLGMLIGFVGMVAGIFLSYYWETPASATITMIFIGIFLLVSLVGLLRKR
4R9U Chain:A ((85-260))
------------------------------------QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLSAIAGALIITLILLRFARRH---LSTSRLLLAGVALGIISSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQ--SWLMLALIPVLLWISSQSRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLSGLTDHRVLLPGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKA--
General information:
TITO was launched using:
RESULT:
Template:
4R9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132818 for 1046 contacts (-127.0/contact) +
2D Compatibility (PS) -16161 + (NN) -6002 + (LL) 5568
1D Compatibility (HY) -12400 + (ID) 2300
Total energy: -164113.0 ( -156.90 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_4R9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R9U-query.scw
PDB file :
Tito_Scwrl_4R9U.pdb
: