Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGVGKMASAIIQGLKQTQHDIVISGSCLERSKEIAERLDVTYAESHQSLINQADIIMLGIKPQLFEKVL---LPLDITKPIISMAAGISLARLSQLTRSDLPLIRIMPNINAQILQSCTAICYNNHVSDELRQLTKEITDSFGSSFDIAETNFDTFTALAGSSPAYIYLFIEALAKAGVKYGFPKEQALSIVGQTVLASSQNLLQGQNSTSDLIDNICSPGGTTIAGLLDLEKNGLTHSVISAIDATIEKAKKL
2RCY Chain:A ((46-258))
--------------------------------------------LNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAM
General information:
TITO was launched using:
RESULT:
Template:
2RCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99530 for 1374 contacts (-72.4/contact) +
2D Compatibility (PS) -22151 + (NN) -4378 + (LL) 3548
1D Compatibility (HY) -15600 + (ID) 3600
Total energy: -141711.0 ( -103.14 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_2RCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCY-query.scw
PDB file :
Tito_Scwrl_2RCY.pdb
: