Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTETLLSIKDLSITFTQYGRFLKPFQSTPIQALNLEIKKGELLAIIGASGSGKSLLAHAIMDILPKNASVTGDMIYRGQSLNSKR-IKQLRGKDITLIPQSVNYLDPSMKV-------KHQVRLGISENSKATQEGLFQQFGLKESDGDLYPFQLSGGMLRRVLFTTCISDKVSLIIADEPTPGLHPDALQMVLDQLRSFADKGISVIFITHDIVAASQIADRITIFKEGKAIETA-PASFFSGNGEQLQTEFARSLLRSLPQQEFLKGVTHDLRG
4U02 Chain:A ((20-242))
-----------------------------LKGIHLEVAPGEKLVIIGPSGSGKSTLIRTINRL---EDFQEGEVVVDGLSVKDDRALREIR-REVGMVFQQFN-LFPHMTVLENVTLAPMRVRRWPREKAEKKALELLERVGILDQ-ARKYPAQLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQGGMTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEIFTRPKEERTRSFLQRVLH-----------------
General information:
TITO was launched using:
RESULT:
Template:
4U02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127766 for 1672 contacts (-76.4/contact) +
2D Compatibility (PS) -23476 + (NN) -13594 + (LL) 3112
1D Compatibility (HY) -16800 + (ID) 3300
Total energy: -181824.0 ( -108.75 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4U02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U02-query.scw
PDB file :
Tito_Scwrl_4U02.pdb
: