Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREIRNLGIDC-QVENGRVRFHGDIKTIIETNLWLRAADRIKIIVGEFPARTFEELFQGVYGLDWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKLQKVFHRPEGVPLQENGAEFKIEVSILKDKATVMIDTTGSSLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEAWPWVDQSQVQKVRDEAESKANYDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLKTDKINGVIISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWSKFILTSDEGFEKKYGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3LDU Chain:A ((5-383)) | --KNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVHLKIAEFEAKSFDELFENTKRINWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYL--EDGLLKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREK--KAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKLYNGMLKTNFFQYPGPKPPRN-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170154 for 3178 contacts (-53.5/contact) +
2D Compatibility (PS) -40175 + (NN) -15930 + (LL) 380
1D Compatibility (HY) -30400 + (ID) 8450
Total energy: -264729.0 ( -83.30 by residue)
QMean score : 0.563
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