Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEALKSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNELLKLVDETTG-IRLHFIRQSHPRGLGDAVLQAKAFVGNEPFV--VMLGDDLMDITNNKVIPLTKQLINDFEATHASTIAVMEVPHEDVSAYGVIAPQGEGVNG-LYSVNTFVEKPSPEEAPSNLAIIGRYLLTPEIFNILETQKPGAGNEIQLTDAIDTL-NKTQRVFARKFTGDRYDVGDKFGFMKTSIDYALQHP----QVKDDLKKYIIDLGKSLEKTSKK |
| 2PA4 Chain:A ((12-299)) | --VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDL--VLPTGVMERMAQVRAEF---GGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPVYGAQLKDAIKQILAEHEAA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143527 for 2251 contacts (-63.8/contact) +
2D Compatibility (PS) -30192 + (NN) -15751 + (LL) 1048
1D Compatibility (HY) -20000 + (ID) 5600
Total energy: -214022.0 ( -95.08 by residue)
QMean score : 0.517
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