Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVITVKNDIEGGKIAFTLLEEKMKAGAQT-LGLATGSSPITFYEEIVK----SNLDFSNMVSINLDEYVGIAASNDQSYSYFMHKHLF---DAKPFKENNLPNGLAKDLKEEIKRYDAVINA-NPIDFQILGIGRNGHIGFNEPGTPFDITTHVVDLAPSTIEANSRFFNSIDDVPKQALSMGIGSIMKSKTIVLVAYGIEKAEAIASMIKGPITEDMPASILQKHDDVVIIVDEAAASKL
2BKV Chain:A ((1-239))
MKVMECQTYEELSQIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSR-HFIPNGNADDLEAECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREAASLR
General information:
TITO was launched using:
RESULT:
Template:
2BKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127999 for 1937 contacts (-66.1/contact) +
2D Compatibility (PS) -25305 + (NN) -15747 + (LL) 104
1D Compatibility (HY) -19200 + (ID) 5250
Total energy: -193397.0 ( -99.84 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_2BKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKV-query.scw
PDB file :
Tito_Scwrl_2BKV.pdb
: