Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENA--PEAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTLDKSYDFVFMDSAKSKYIVFLPQVLKH--LDVGGVVVLDDIFQ-----GGDIAKPI-DEVRRGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
4YMG Chain:A ((54-232))
--------------------------------------------------------GSWMIFTARDRKPKRILEIGCYSGYSALAWYEGTRDTKAEIVTLEYSPKMIAASREAFKKYGVGDRVKLIEGPAENTLKTLEGEFDLIFVDANKDGYAGYVKTILDQGLLSANGIILCDNVFARGLTIGPDCAPWLNDHVRPYWNGCGQALDKFSAGLMEDPRIDVLLLPVFDGVTQIRWKD-------
General information:
TITO was launched using:
RESULT:
Template:
4YMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125563 for 1283 contacts (-97.9/contact) +
2D Compatibility (PS) -18624 + (NN) -11106 + (LL) 5136
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -166407.0 ( -129.70 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_4YMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMG-query.scw
PDB file :
Tito_Scwrl_4YMG.pdb
: