Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYKKRRFFMSKNNNTTCLIETAIFAALAMALSMIPDFA-SWFTPSFGAIPLILFALRRGTKYGLFAGLIWGLLHFVLSKVYYLSLSQVFIEYILAFISMGLAGVFSAKFKDALSSSSKTKALSLA--LSGAILATFVRYVWHYIAGVIFWASYAPKGMSATLYSLSVNGTAGLLTLFFVVISIIILVISYPSFFLPKK
4N4D Chain:A ((7-178))
--------------NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLF----------RQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSN
General information:
TITO was launched using:
RESULT:
Template:
4N4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184801 for 1338 contacts (-138.1/contact) +
2D Compatibility (PS) -17304 + (NN) -5268 + (LL) 1716
1D Compatibility (HY) -25600 + (ID) 3850
Total energy: -235107.0 ( -175.72 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_4N4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N4D-query.scw
PDB file :
Tito_Scwrl_4N4D.pdb
: