Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEML-RGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
1WVI Chain:A ((1002-1254))
-TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF---
General information:
TITO was launched using:
RESULT:
Template:
1WVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180889 for 2175 contacts (-83.2/contact) +
2D Compatibility (PS) -27769 + (NN) -17062 + (LL) 60
1D Compatibility (HY) -32400 + (ID) 9650
Total energy: -267710.0 ( -123.09 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_1WVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WVI-query.scw
PDB file :
Tito_Scwrl_1WVI.pdb
: