Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
3TOC Chain:A ((7-223))
---LNFSLLDEPIPLRGGTILVLEDVCVFSKIVQYCYQYE--SELKFF---MKTIKESEIMLVTDILGFDVNSSTILKLIHADLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETQSDTIFEKCLEILQIFKYLTKKKLLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILD----LITKNM-
General information:
TITO was launched using:
RESULT:
Template:
3TOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163780 for 1383 contacts (-118.4/contact) +
2D Compatibility (PS) -21903 + (NN) -6240 + (LL) 908
1D Compatibility (HY) -34800 + (ID) 7400
Total energy: -233215.0 ( -168.63 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3TOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TOC-query.scw
PDB file :
Tito_Scwrl_3TOC.pdb
: