Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISRKVALVTGASAGFGAAIVTKLVSDGYSVIGCARRMDKLKCF-GEKFSEGYFYPLQMDITSRESVDKALESLPKNLQSIDLLVNNAGLALGLDKSYEADFEDWMTMINTNVVGLIYLTRCILPKMVEVNRGL-IINLGSTAGTIPYPGANVYGASKAFVKQFSLNLRADLAGTKIRVTNLEPGLCEGTEFSTVRFKGDHKRVEKLYEGAHAIQAEDIANTVSWVASQPEHININRIEIMPVSQTYGPQPVYRD
2NWQ Chain:A ((25-269))
-------FITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCE---------------------GAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIH--
General information:
TITO was launched using:
RESULT:
Template:
2NWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132492 for 1792 contacts (-73.9/contact) +
2D Compatibility (PS) -23549 + (NN) -8348 + (LL) 2228
1D Compatibility (HY) -20800 + (ID) 5500
Total energy: -188461.0 ( -105.17 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_2NWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NWQ-query.scw
PDB file :
Tito_Scwrl_2NWQ.pdb
: