Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHSSWHDLIKRELPNHYYNKINTFMDAVYESGIVYPPRDKVFNAIQITPLENVKVVIIGQDPYHGPQQAQGLSFSVPDNLPAPPSLQNILKELAEDIG---SRSHHDLTSWAQQGVLLLNACLTVPEHQANGHAGLIWEPFTDAVIKVVNQKETPVVFILWGGYARKKKSLIDNPIHHIIESPHPSPLSAYRGFFGSRPFSRTNHFLEEEGINEIDWLN
4UQM Chain:A ((27-238))
-----WQEALLPEFSAPYFHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAAQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQL
General information:
TITO was launched using:
RESULT:
Template:
4UQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111360 for 1727 contacts (-64.5/contact) +
2D Compatibility (PS) -22533 + (NN) -10800 + (LL) 352
1D Compatibility (HY) -20800 + (ID) 5900
Total energy: -171041.0 ( -99.04 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4UQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UQM-query.scw
PDB file :
Tito_Scwrl_4UQM.pdb
: