Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKVRIYHNPNCGTSRNVLAIIRHCGIEPEIIYYLKTPPSRMELVELLLEMKLSARELLRTDVPAYEKFNLESSSVTDEEMIDAMIQDPILINRPIVVTSKGAKLCRPCEEILTILPVKMEKDFVKEDGQIIQSL
1SK2 Chain:A ((3-130))
--NITIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLAKNVEPYEQLGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLDILQDAQKGAFTKEDGEKVVDE
General information:
TITO was launched using:
RESULT:
Template:
1SK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107500 for 953 contacts (-112.8/contact) +
2D Compatibility (PS) -13379 + (NN) -1203 + (LL) 312
1D Compatibility (HY) -13200 + (ID) 3450
Total energy: -138420.0 ( -145.25 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_1SK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SK2-query.scw
PDB file :
Tito_Scwrl_1SK2.pdb
: