Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVRDTFFLQQKSQMASRADVSLAKDL-------QDTLHANQNYC---VGMAANMIGSLKRVIIINVGITN---LVMFNPVLVAKSDPYETEESCLSLV-GCRSTQR------YRH--ITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
3CMD Chain:A ((36-175))
-------------------SEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKRIIAVHVPS--SLSTVMYNPKILSHS----VQDACLGEGEGCLSVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMF
General information:
TITO was launched using:
RESULT:
Template:
3CMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61636 for 709 contacts (-86.9/contact) +
2D Compatibility (PS) -11849 + (NN) -329 + (LL) 1948
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -83616.0 ( -117.94 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3CMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CMD-query.scw
PDB file :
Tito_Scwrl_3CMD.pdb
: