Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVE------VDTTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS
4P84 Chain:A ((8-177))
-----ILDEQAIRRALTRIAHEIIERNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKPVPVGEIDITLYRDDLSVTSNDEPLVKGTDIPVDITDKKVILVDDVLYTGRTVRAGMDALMDLGRPSQIQLAVLVDRGHRELPIRADYVGKNVPTSKSERIVVQLDEVDQNDRVSIYEN-
General information:
TITO was launched using:
RESULT:
Template:
4P84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106903 for 1301 contacts (-82.2/contact) +
2D Compatibility (PS) -17735 + (NN) -2207 + (LL) 744
1D Compatibility (HY) -20000 + (ID) 5200
Total energy: -151301.0 ( -116.30 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_4P84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P84-query.scw
PDB file :
Tito_Scwrl_4P84.pdb
: