Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSINIAIDGPASSGKSTVAKIIAKNLNYTYLDTGAMYRCATYLALQHGYEAQDVSKILGLLAERPISFGKAEDGSQTVFIGTEEVTLAIRQNDVTNNVSWVSAIPEIREELVNQQRRIAKD-GAIIMDGRDIGTVVLPDAELKIFLVASVDERAERRFKENQEKGIESDFETLKSEIAARDYKDSHREVSPLKAAEDAIEFDTTGVSIEGVVTFIQEKAEKIIDMKN
3R8C Chain:A ((-1-211))
---MVVAVDGPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLWVLRAGVDLTDPAAIAAATDQVPMSVSSDPD-AQTALLAGEDVSVPIRGNEVTGAVSAVSAVPAVRERLVRQQRELAESSGAVVVEGRDIGTVVLPDADVKIYLTASAQARAQRRN---------------LADVQRRDHL-------PLRPAEDALEVDTSDMTQEQVVAHLLDLVRTR-----
General information:
TITO was launched using:
RESULT:
Template:
3R8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110360 for 1475 contacts (-74.8/contact) +
2D Compatibility (PS) -19848 + (NN) -6243 + (LL) 1644
1D Compatibility (HY) -13600 + (ID) 4450
Total energy: -152857.0 ( -103.63 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3R8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R8C-query.scw
PDB file :
Tito_Scwrl_3R8C.pdb
: