Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNNDIPKEDMEYILDTAWLSPSSVGLEGWRFLVLDRQTIAKFRDKLKEVAWGAQYQLDTASHFVLLLAEKGAYYN-ADSMINSLVR-RGLGDPAALESRIPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDKKEAISCMVSFGYRLREPKHSRARKERQEVITWVE
3OF4 Chain:A ((11-200))
----------------RYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGL---REQLVNHSFGQQKVADS-SALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTR-----NYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDL--GLSTVFACPV--GYRSEADTTQFQKKVRQPLSRFKV
General information:
TITO was launched using:
RESULT:
Template:
3OF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77465 for 1416 contacts (-54.7/contact) +
2D Compatibility (PS) -20285 + (NN) -4984 + (LL) 2640
1D Compatibility (HY) -10800 + (ID) 2950
Total energy: -113844.0 ( -80.40 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_3OF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OF4-query.scw
PDB file :
Tito_Scwrl_3OF4.pdb
: