Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
2K3F Chain:A ((1-141))
MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
General information:
TITO was launched using:
RESULT:
Template:
2K3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72715 for 1079 contacts (-67.4/contact) +
2D Compatibility (PS) -15484 + (NN) -10660 + (LL) 0
1D Compatibility (HY) -15600 + (ID) 5100
Total energy: -119559.0 ( -110.81 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_2K3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K3F-query.scw
PDB file :
Tito_Scwrl_2K3F.pdb
: