Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIAAMEEELKLLVENLEDKSQETVLSNVYYSGRYGEHELVLVQSGVGKVMSAMSVAILVESFKVDAIINTGSAGAVATGLNVGDVVVADTLVYHDVDLTAFGYDYGQMSMQPLYFHSDKTFVSTFEAVLSKEEMTSKVGLIATGDSFIAGQEKIDVIKGHFPQVLAVEMEGAAIAQAAQATGKPFVVVRAMSDTAAHDANITFDEFIIEAGKRSAQVLMAFLKAL
3MMS Chain:A ((1-229))
MKIGIIAAMPEELAYLVQHLDNAQEQVVLGNTYHTGTIVSHEVVLVESGIGKVMSAMSVAILAVHFQVDALINTGSAGAVAEGIAVGDVVIADKLAYHDVDVTAFGYAYGQMAQQPLYFESDKTFVAQIQESL----QNWHLGLIATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHALNLPVLVIRAMSDNANHEANIFFDEFIIEAGRRSAQVLLAFLKAL
General information:
TITO was launched using:
RESULT:
Template:
3MMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173462 for 2041 contacts (-85.0/contact) +
2D Compatibility (PS) -24230 + (NN) -6961 + (LL) 244
1D Compatibility (HY) -28400 + (ID) 7750
Total energy: -240559.0 ( -117.86 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_3MMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMS-query.scw
PDB file :
Tito_Scwrl_3MMS.pdb
: