Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTFYEYPKCTTCRSAKKELTELGLTFEAIDIKSNPPKASLLKELLENSPYDLKKFFNTSGNSYRELGLKDKFDDLTLDQALDLLASDGMLIKRPLLVKDNKILQIGYRTKYKDLNLV
3GKX Chain:A ((5-109))
---FLQYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKFFNTSGVVYKELKLSSKLPTMTEEEQIALLATNGKLVKRPLVVTERFVL-VGFKPEEWEKLK-
General information:
TITO was launched using:
RESULT:
Template:
3GKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28962 for 707 contacts (-41.0/contact) +
2D Compatibility (PS) -11463 + (NN) -5459 + (LL) 572
1D Compatibility (HY) -6400 + (ID) 1550
Total energy: -53262.0 ( -75.34 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_3GKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKX-query.scw
PDB file :
Tito_Scwrl_3GKX.pdb
: