Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLI--DKYQL-DPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
3CCG Chain:A ((16-187))
---------------------LGEKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRN--SYLLHGLAGRILAKKVIGIDDEDVLNAIEFHTTGRPNMSLLEKIIYIADYIEPGREFKGVDELRKAADEDLNKALLMSFDNTIKFVIDKGGFLHHNTIEARNYLISRK-
General information:
TITO was launched using:
RESULT:
Template:
3CCG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69422 for 1336 contacts (-52.0/contact) +
2D Compatibility (PS) -18194 + (NN) -7287 + (LL) 1676
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -111877.0 ( -83.74 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3CCG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CCG-query.scw
PDB file :
Tito_Scwrl_3CCG.pdb
: