Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIFDTHTHLNVENFEGKIDEEINLASELGVTKMNVVGFDQDTISKSLELSSQYAQVYSTIGWHPTEAGSYDDNIESMIISHLE----NPKVIALGEIGLDYYWMEDPKDIQIEVFKRQIELSKEYNLPFVVHTRDALEDTYEVIKESGVGPFGGIMHSFSGSLEMAQKFIDLGMMISFSGVVTFKKALDVQEAARELPLDKILVETDAPYLAPVPKRGRENKTAYTRYVVEKIAELRGITVEEVAEATYQNAVRIFRLDEKN
1J6O Chain:A ((2-250))
-----DTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDF----IEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRIFLEVKE-
General information:
TITO was launched using:
RESULT:
Template:
1J6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119927 for 2149 contacts (-55.8/contact) +
2D Compatibility (PS) -26927 + (NN) -13054 + (LL) 1400
1D Compatibility (HY) -21600 + (ID) 4750
Total energy: -184858.0 ( -86.02 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1J6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6O-query.scw
PDB file :
Tito_Scwrl_1J6O.pdb
: