Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDV--RVALQREVIDF-KEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTCLATQTAEATFEGGI
1PDO Chain:A ((3-126))
-IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVD--KEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALK----------------
General information:
TITO was launched using:
RESULT:
Template:
1PDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96663 for 930 contacts (-103.9/contact) +
2D Compatibility (PS) -13051 + (NN) -2496 + (LL) 1800
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -121960.0 ( -131.14 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1PDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDO-query.scw
PDB file :
Tito_Scwrl_1PDO.pdb
: