Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
4H8E Chain:A ((19-253))
-----------LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYP----DPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGL
General information:
TITO was launched using:
RESULT:
Template:
4H8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106335 for 1836 contacts (-57.9/contact) +
2D Compatibility (PS) -25488 + (NN) -12793 + (LL) 1844
1D Compatibility (HY) -23600 + (ID) 6500
Total energy: -172872.0 ( -94.16 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4H8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H8E-query.scw
PDB file :
Tito_Scwrl_4H8E.pdb
: