Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEKGLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELANH-VSVETGQFGADMQVSLINDGPVTIVLDTKNK
2DBO Chain:A ((1-146))
MRAVIQRVKKSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQFTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESGLKVETGIFGAMMDVFIENWGPVTIIIDSREI
General information:
TITO was launched using:
RESULT:
Template:
2DBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92975 for 1113 contacts (-83.5/contact) +
2D Compatibility (PS) -15583 + (NN) -5662 + (LL) 0
1D Compatibility (HY) -15600 + (ID) 3350
Total energy: -133170.0 ( -119.65 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_2DBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DBO-query.scw
PDB file :
Tito_Scwrl_2DBO.pdb
: