Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLTLVYISLSG-NTQSFVKRLSEQLSTWHNCQVSTINIKEQNHQTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIAAHNNVKNCIGIVGSGNRNFNNQYCLTAKQYSERFGFPMLGDFELRGTSSDVERIANIIVETLSNFKA
3N3A Chain:C ((24-147))
-----LVYFSSSSENTQRFIERLG----------LPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVI------RFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQP-
General information:
TITO was launched using:
RESULT:
Template:
3N3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70662 for 937 contacts (-75.4/contact) +
2D Compatibility (PS) -13145 + (NN) -1326 + (LL) 1428
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -96255.0 ( -102.73 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_3N3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3A-query.scw
PDB file :
Tito_Scwrl_3N3A.pdb
: