Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVN----------DEPDNRRGRKLYVGDVVEIEGFGSFQVVN
2HCU Chain:A ((35-93))
-----NIDTDQILPKQFLKLID---KKGFGKYLMYEWRYLDNNYTENPDFIFNQPEYREASILITGD--------------
General information:
TITO was launched using:
RESULT:
Template:
2HCU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8160 for 201 contacts (-40.6/contact) +
2D Compatibility (PS) -5103 + (NN) -390 + (LL) 1964
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -16289.0 ( -81.04 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_2HCU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HCU-query.scw
PDB file :
Tito_Scwrl_2HCU.pdb
: