Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIY--------------INDHYGLWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
3TG2 Chain:A ((26-204))
---ASRAVLLIHNMQEYFVHYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQPANQDPAERALLSDFWG------PGLSEETA------IIAPLAPESGDVQLTKWRYSAFKKSPLLDWLRETGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIGDGVADFSLSDHEFSLRYISGRTGAVKSTQQACLE-
General information:
TITO was launched using:
RESULT:
Template:
3TG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117677 for 1289 contacts (-91.3/contact) +
2D Compatibility (PS) -17536 + (NN) -3950 + (LL) 1116
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -151747.0 ( -117.72 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_3TG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TG2-query.scw
PDB file :
Tito_Scwrl_3TG2.pdb
: