Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLENKHLRKRLDDTTQQIEKFKADKKESKTQK-----------TEQTDIGEGYDNLARLYQEGFHICNVHYGSVRKEDCLFCLSFLNKK
3L1C Chain:A ((42-162))
MERKELHNTVMDLRGNIRVFCRIRPPLES------EENRMCCTWTYH-----DESTVELQSIDA------GQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYG-----------------
General information:
TITO was launched using:
RESULT:
Template:
3L1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11518 for 380 contacts (30.3/contact) +
2D Compatibility (PS) -8741 + (NN) 686 + (LL) 2680
1D Compatibility (HY) -6000 + (ID) 1400
Total energy: -1257.0 ( -3.31 by residue)
QMean score : 0.161
(partial model without unconserved sides chains):
PDB file :
Tito_3L1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L1C-query.scw
PDB file :
Tito_Scwrl_3L1C.pdb
: