Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK
1YSF Chain:A ((2-53))
-FMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPN-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12537 for 211 contacts (-59.4/contact) +
2D Compatibility (PS) -5570 + (NN) -805 + (LL) 3216
1D Compatibility (HY) -8400 + (ID) 2600
Total energy: -26696.0 ( -126.52 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1YSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSF-query.scw
PDB file :
Tito_Scwrl_1YSF.pdb
: